AFE_2397 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_2397

Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899. (414 aa)

Predicted Functional Partners:

AFE_2398

0.946

AFE_2399

0.946

AFE_0508

0.774

AFE_0509

0.774

AFE_0833

0.774

AFE_0834

0.774

AFE_1556

0.545

AFE_2396

0.477

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Fusion

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
AFE_0508	AFE_0509	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.	0.840
AFE_0508	AFE_1556	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.576
AFE_0508	AFE_2397	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.	0.774
AFE_0509	AFE_0508	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.840
AFE_0509	AFE_1556	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.553
AFE_0509	AFE_2397	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.	0.774
AFE_0833	AFE_0834	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.840
AFE_0833	AFE_1556	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.553
AFE_0833	AFE_2397	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.	0.774
AFE_0834	AFE_0833	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.840
AFE_0834	AFE_1556	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.576
AFE_0834	AFE_2397	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.	0.774
AFE_1556	AFE_0508	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.576
AFE_1556	AFE_0509	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family.	0.553
AFE_1556	AFE_0833	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.553
AFE_1556	AFE_0834	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.576
AFE_1556	AFE_2397	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.	0.545
AFE_1556	AFE_2398	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.576
AFE_1556	AFE_2399	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.	0.553
AFE_2396	AFE_2397	Hypothetical protein; Identified by glimmer; putative.	Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.	0.477