STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2398Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589. (313 aa)    
Predicted Functional Partners:
AFE_2397
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.
     0.946
AFE_2399
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.
 
    
0.840
AFE_0507
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family.
 
     0.774
AFE_0835
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899.
 
     0.774
AFE_1145
Tyrosine recombinase, phage integrase family; Identified by similarity to SP:P46352; similarity to SP:Q8YJP2; match to protein family HMM PF00589; Belongs to the 'phage' integrase family.
  
     0.773
AFE_1556
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.
  
     0.576
AFE_2396
Hypothetical protein; Identified by glimmer; putative.
       0.477
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.