AFE_2413 protein (Acidithiobacillus ferrooxidans)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_1330	AFE_1597	AFE_1330	AFE_1597	ISAfe2, transposase; Required for the transposition of the insertion element.	Transposase, degenerate.	0.411
AFE_1330	AFE_2413	AFE_1330	AFE_2413	ISAfe2, transposase; Required for the transposition of the insertion element.	Transposase, degenerate; Identified by match to protein family HMM PF01695.	0.634
AFE_1330	AFE_3177	AFE_1330	AFE_3177	ISAfe2, transposase; Required for the transposition of the insertion element.	ISAfe9, transposase; Identified by match to protein family HMM PF00665.	0.539
AFE_1566	AFE_2413	AFE_1566	AFE_2413	DNA replication protein DnaC, putative; Identified by similarity to SP:P07905; match to protein family HMM PF01695.	Transposase, degenerate; Identified by match to protein family HMM PF01695.	0.644
AFE_1566	AFE_3177	AFE_1566	AFE_3177	DNA replication protein DnaC, putative; Identified by similarity to SP:P07905; match to protein family HMM PF01695.	ISAfe9, transposase; Identified by match to protein family HMM PF00665.	0.600
AFE_1566	dnaB	AFE_1566	AFE_2819	DNA replication protein DnaC, putative; Identified by similarity to SP:P07905; match to protein family HMM PF01695.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.836
AFE_1566	polI	AFE_1566	AFE_3094	DNA replication protein DnaC, putative; Identified by similarity to SP:P07905; match to protein family HMM PF01695.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.443
AFE_1597	AFE_1330	AFE_1597	AFE_1330	Transposase, degenerate.	ISAfe2, transposase; Required for the transposition of the insertion element.	0.411
AFE_1597	AFE_2413	AFE_1597	AFE_2413	Transposase, degenerate.	Transposase, degenerate; Identified by match to protein family HMM PF01695.	0.570
AFE_1597	AFE_3177	AFE_1597	AFE_3177	Transposase, degenerate.	ISAfe9, transposase; Identified by match to protein family HMM PF00665.	0.497
AFE_2412	AFE_2413	AFE_2412	AFE_2413	Phosphoenolpyruvate-utilizing enzyme mobile domain protein; Identified by match to protein family HMM PF00391.	Transposase, degenerate; Identified by match to protein family HMM PF01695.	0.486
AFE_2413	AFE_1330	AFE_2413	AFE_1330	Transposase, degenerate; Identified by match to protein family HMM PF01695.	ISAfe2, transposase; Required for the transposition of the insertion element.	0.634
AFE_2413	AFE_1566	AFE_2413	AFE_1566	Transposase, degenerate; Identified by match to protein family HMM PF01695.	DNA replication protein DnaC, putative; Identified by similarity to SP:P07905; match to protein family HMM PF01695.	0.644
AFE_2413	AFE_1597	AFE_2413	AFE_1597	Transposase, degenerate; Identified by match to protein family HMM PF01695.	Transposase, degenerate.	0.570
AFE_2413	AFE_2412	AFE_2413	AFE_2412	Transposase, degenerate; Identified by match to protein family HMM PF01695.	Phosphoenolpyruvate-utilizing enzyme mobile domain protein; Identified by match to protein family HMM PF00391.	0.486
AFE_2413	AFE_2414	AFE_2413	AFE_2414	Transposase, degenerate; Identified by match to protein family HMM PF01695.	Conserved hypothetical protein; Identified by similarity to GB:AAN70104.1; match to protein family HMM PF04365.	0.426
AFE_2413	AFE_2415	AFE_2413	AFE_2415	Transposase, degenerate; Identified by match to protein family HMM PF01695.	Conserved hypothetical protein; Identified by similarity to GB:AAO89577.1.	0.426
AFE_2413	AFE_3177	AFE_2413	AFE_3177	Transposase, degenerate; Identified by match to protein family HMM PF01695.	ISAfe9, transposase; Identified by match to protein family HMM PF00665.	0.751
AFE_2413	dnaB	AFE_2413	AFE_2819	Transposase, degenerate; Identified by match to protein family HMM PF01695.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.732
AFE_2413	polI	AFE_2413	AFE_3094	Transposase, degenerate; Identified by match to protein family HMM PF01695.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.443