AFE_2424 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_1430	AFE_2424	AFE_1430	AFE_2424	Cation diffusion facilitator family transporter; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	0.433
AFE_2021	AFE_2424	AFE_2021	AFE_2424	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	0.427
AFE_2021	merA	AFE_2021	AFE_2481	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	Mercuric reductase; Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.729
AFE_2424	AFE_1430	AFE_2424	AFE_1430	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	Cation diffusion facilitator family transporter; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.	0.433
AFE_2424	AFE_2021	AFE_2424	AFE_2021	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.427
AFE_2424	AFE_2425	AFE_2424	AFE_2425	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	Hypothetical protein; Identified by glimmer; putative.	0.557
AFE_2424	atpC-3	AFE_2424	AFE_2423	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	ATP synthase F1, epsilon subunit, putative; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.499
AFE_2424	merA	AFE_2424	AFE_2481	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	Mercuric reductase; Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.487
AFE_2425	AFE_2424	AFE_2425	AFE_2424	Hypothetical protein; Identified by glimmer; putative.	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	0.557
atpC-3	AFE_2424	AFE_2423	AFE_2424	ATP synthase F1, epsilon subunit, putative; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	0.499
merA	AFE_2021	AFE_2481	AFE_2021	Mercuric reductase; Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.	0.729
merA	AFE_2424	AFE_2481	AFE_2424	Mercuric reductase; Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Cation efflux permease, putative; Identified by match to protein family HMM PF01545.	0.487