AFE_2457 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFE_0105	AFE_0719	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.430
AFE_0105	AFE_1498	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	0.623
AFE_0105	AFE_1809	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Identified by similarity to SP:Q46909; match to protein family HMM PF00083; match to protein family HMM PF07690.	0.456
AFE_0105	AFE_2457	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.475
AFE_0105	AFE_2659	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.493
AFE_0105	AFE_3296	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.457
AFE_0719	AFE_0105	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	0.430
AFE_0719	AFE_2457	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.511
AFE_0719	AFE_2659	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.468
AFE_1498	AFE_0105	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	0.623
AFE_1498	AFE_2457	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.501
AFE_1498	AFE_2659	ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.451
AFE_1809	AFE_0105	Identified by similarity to SP:Q46909; match to protein family HMM PF00083; match to protein family HMM PF07690.	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	0.456
AFE_1809	AFE_2457	Identified by similarity to SP:Q46909; match to protein family HMM PF00083; match to protein family HMM PF07690.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.658
AFE_1809	AFE_2659	Identified by similarity to SP:Q46909; match to protein family HMM PF00083; match to protein family HMM PF07690.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.536
AFE_2277	AFE_2457	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.597
AFE_2277	AFE_2659	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.526
AFE_2312	AFE_2457	Identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.465
AFE_2312	AFE_2659	Identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	0.449
AFE_2457	AFE_0105	Amino acid permease family protein; Identified by match to protein family HMM PF00324.	Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.	0.475