STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2467Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (109 aa)    
Predicted Functional Partners:
AFE_2466
Conserved hypothetical protein; Identified by match to protein family HMM PF08443.
 
     0.925
AFE_2465
Hypothetical protein; Identified by glimmer; putative.
       0.668
AFE_2468
ISAfe4, tranposase orf1; Assignment based on BLAST search at the ISFinder database, and proximity to other transposase ORFs.
       0.560
AFE_2469
ISAfe4, transposase orf2; Identified by match to protein family HMM PF05717.
       0.560
AFE_1418
Conserved hypothetical protein; Identified by match to protein family HMM PF08681.
   
   0.511
proB-1
Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.
       0.511
AFE_2470
ISAfe4, transposase orf3; Identified by match to protein family HMM PF03050.
       0.455
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.