AFE_2513 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0117	AFE_0409	AFE_0117	AFE_0409	Conserved domain protein; Identified by similarity to SP:P77234; match to protein family HMM PF08238.	Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.	0.744
AFE_0117	AFE_2513	AFE_0117	AFE_2513	Conserved domain protein; Identified by similarity to SP:P77234; match to protein family HMM PF08238.	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	0.727
AFE_0303	AFE_0409	AFE_0303	AFE_0409	Conserved domain protein; Identified by match to protein family HMM PF08238.	Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.	0.738
AFE_0303	AFE_2513	AFE_0303	AFE_2513	Conserved domain protein; Identified by match to protein family HMM PF08238.	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	0.707
AFE_0409	AFE_0117	AFE_0409	AFE_0117	Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.	Conserved domain protein; Identified by similarity to SP:P77234; match to protein family HMM PF08238.	0.744
AFE_0409	AFE_0303	AFE_0409	AFE_0303	Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.	Conserved domain protein; Identified by match to protein family HMM PF08238.	0.738
AFE_0409	AFE_2513	AFE_0409	AFE_2513	Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	0.609
AFE_0409	AFE_2686	AFE_0409	AFE_2686	Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.	Conserved domain protein; Identified by match to protein family HMM PF08238.	0.748
AFE_2512	AFE_2513	AFE_2512	AFE_2513	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	0.541
AFE_2512	AFE_2516	AFE_2512	AFE_2516	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein; Identified by match to protein family HMM PF00814.	0.487
AFE_2512	AFE_2517	AFE_2512	AFE_2517	Hypothetical protein; Identified by glimmer; putative.	ATP-dependent helicase, DEXD family.	0.487
AFE_2512	prfC	AFE_2512	AFE_2514	Hypothetical protein; Identified by glimmer; putative.	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.	0.487
AFE_2512	rimI	AFE_2512	AFE_2515	Hypothetical protein; Identified by glimmer; putative.	Ribosomal-protein-alanine acetyltransferase; Identified by similarity to SP:P09453; match to protein family HMM PF00583; match to protein family HMM TIGR01575.	0.487
AFE_2513	AFE_0117	AFE_2513	AFE_0117	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	Conserved domain protein; Identified by similarity to SP:P77234; match to protein family HMM PF08238.	0.727
AFE_2513	AFE_0303	AFE_2513	AFE_0303	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	Conserved domain protein; Identified by match to protein family HMM PF08238.	0.707
AFE_2513	AFE_0409	AFE_2513	AFE_0409	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.	0.609
AFE_2513	AFE_2512	AFE_2513	AFE_2512	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	Hypothetical protein; Identified by glimmer; putative.	0.541
AFE_2513	AFE_2516	AFE_2513	AFE_2516	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	Conserved hypothetical protein; Identified by match to protein family HMM PF00814.	0.727
AFE_2513	AFE_2517	AFE_2513	AFE_2517	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	ATP-dependent helicase, DEXD family.	0.691
AFE_2513	AFE_2686	AFE_2513	AFE_2686	Conserved hypothetical protein; Identified by match to protein family HMM PF08238.	Conserved domain protein; Identified by match to protein family HMM PF08238.	0.729