AFE_2526 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0150	AFE_2160	AFE_0150	AFE_2160	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	0.902
AFE_0150	AFE_2526	AFE_0150	AFE_2526	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	0.908
AFE_0150	speE	AFE_0150	AFE_0156	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.	0.928
AFE_2160	AFE_0150	AFE_2160	AFE_0150	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	0.902
AFE_2160	AFE_2526	AFE_2160	AFE_2526	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	0.908
AFE_2160	speE	AFE_2160	AFE_0156	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.	0.916
AFE_2176	AFE_2526	AFE_2176	AFE_2526	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	0.986
AFE_2176	speA	AFE_2176	AFE_1471	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.	0.618
AFE_2523	AFE_2525	AFE_2523	AFE_2525	Identified by match to protein family HMM PF04023.	Hypothetical protein; Identified by glimmer; putative.	0.649
AFE_2523	AFE_2526	AFE_2523	AFE_2526	Identified by match to protein family HMM PF04023.	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	0.439
AFE_2523	AFE_2528	AFE_2523	AFE_2528	Identified by match to protein family HMM PF04023.	Glutamine amidotransferase, class I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	0.439
AFE_2523	feoB	AFE_2523	AFE_2524	Identified by match to protein family HMM PF04023.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	0.974
AFE_2525	AFE_2523	AFE_2525	AFE_2523	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF04023.	0.649
AFE_2525	AFE_2526	AFE_2525	AFE_2526	Hypothetical protein; Identified by glimmer; putative.	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	0.528
AFE_2525	AFE_2528	AFE_2525	AFE_2528	Hypothetical protein; Identified by glimmer; putative.	Glutamine amidotransferase, class I; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.	0.528
AFE_2525	feoB	AFE_2525	AFE_2524	Hypothetical protein; Identified by glimmer; putative.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	0.786
AFE_2526	AFE_0150	AFE_2526	AFE_0150	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	0.908
AFE_2526	AFE_2160	AFE_2526	AFE_2160	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	Conserved hypothetical protein; Identified by similarity to GB:CAE33855.1.	0.908
AFE_2526	AFE_2176	AFE_2526	AFE_2176	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	Peptidyl-arginine deiminase, Porphyromonas-type; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.	0.986
AFE_2526	AFE_2523	AFE_2526	AFE_2523	Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381.	Identified by match to protein family HMM PF04023.	0.439