AFE_2534 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_2534

Identified by match to protein family HMM PF00850. (388 aa)

Predicted Functional Partners:

AFE_1499

0.958

AFE_0882

0.937

AFE_2533

0.937

htpG

0.896

AFE_3010

0.893

AFE_1502

0.865

ppiB

0.831

AFE_0942

0.813

AFE_1371

0.813

AFE_0154

0.806

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0154	AFE_1499	AFE_0154	AFE_1499	Identified by match to protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.	ATPase, AAA family; Identified by match to protein family HMM PF00004.	0.802
AFE_0154	AFE_1502	AFE_0154	AFE_1502	Identified by match to protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Ankyrin repeat protein/rhodanese-like domain protein; Identified by match to protein family HMM PF00023; match to protein family HMM PF00581.	0.884
AFE_0154	AFE_2533	AFE_0154	AFE_2533	Identified by match to protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM PF00248.	0.572
AFE_0154	AFE_2534	AFE_0154	AFE_2534	Identified by match to protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Identified by match to protein family HMM PF00850.	0.806
AFE_0154	AFE_3010	AFE_0154	AFE_3010	Identified by match to protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Polyketide synthase, type I, putative; Identified by similarity to GB:AAK26474.1; match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08659.	0.826
AFE_0154	ppiB	AFE_0154	AFE_1986	Identified by match to protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.792
AFE_0882	AFE_0942	AFE_0882	AFE_0942	Flavin monoamine oxidase family protein; Identified by similarity to SP:P40974; match to protein family HMM PF01266.	DNA helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434.	0.748
AFE_0882	AFE_1371	AFE_0882	AFE_1371	Flavin monoamine oxidase family protein; Identified by similarity to SP:P40974; match to protein family HMM PF01266.	Helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271.	0.748
AFE_0882	AFE_1499	AFE_0882	AFE_1499	Flavin monoamine oxidase family protein; Identified by similarity to SP:P40974; match to protein family HMM PF01266.	ATPase, AAA family; Identified by match to protein family HMM PF00004.	0.521
AFE_0882	AFE_1502	AFE_0882	AFE_1502	Flavin monoamine oxidase family protein; Identified by similarity to SP:P40974; match to protein family HMM PF01266.	Ankyrin repeat protein/rhodanese-like domain protein; Identified by match to protein family HMM PF00023; match to protein family HMM PF00581.	0.455
AFE_0882	AFE_2534	AFE_0882	AFE_2534	Flavin monoamine oxidase family protein; Identified by similarity to SP:P40974; match to protein family HMM PF01266.	Identified by match to protein family HMM PF00850.	0.937
AFE_0882	AFE_3010	AFE_0882	AFE_3010	Flavin monoamine oxidase family protein; Identified by similarity to SP:P40974; match to protein family HMM PF01266.	Polyketide synthase, type I, putative; Identified by similarity to GB:AAK26474.1; match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08659.	0.520
AFE_0942	AFE_0882	AFE_0942	AFE_0882	DNA helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434.	Flavin monoamine oxidase family protein; Identified by similarity to SP:P40974; match to protein family HMM PF01266.	0.748
AFE_0942	AFE_1502	AFE_0942	AFE_1502	DNA helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434.	Ankyrin repeat protein/rhodanese-like domain protein; Identified by match to protein family HMM PF00023; match to protein family HMM PF00581.	0.719
AFE_0942	AFE_2534	AFE_0942	AFE_2534	DNA helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434.	Identified by match to protein family HMM PF00850.	0.813
AFE_0942	AFE_3010	AFE_0942	AFE_3010	DNA helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434.	Polyketide synthase, type I, putative; Identified by similarity to GB:AAK26474.1; match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08659.	0.494
AFE_0942	ppiB	AFE_0942	AFE_1986	DNA helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434.	Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.423
AFE_1371	AFE_0882	AFE_1371	AFE_0882	Helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271.	Flavin monoamine oxidase family protein; Identified by similarity to SP:P40974; match to protein family HMM PF01266.	0.748
AFE_1371	AFE_1502	AFE_1371	AFE_1502	Helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271.	Ankyrin repeat protein/rhodanese-like domain protein; Identified by match to protein family HMM PF00023; match to protein family HMM PF00581.	0.719
AFE_1371	AFE_2534	AFE_1371	AFE_2534	Helicase, SNF2/RAD54 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271.	Identified by match to protein family HMM PF00850.	0.813