STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2544Identified by match to protein family HMM PF01494; match to protein family HMM PF05834; match to protein family HMM TIGR02032. (353 aa)    
Predicted Functional Partners:
AFE_2543
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
     0.930
AFE_2546
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
     0.913
AFE_2545
Lipoate-protein ligase A, putative; Identified by similarity to PIR:C70441; match to protein family HMM PF03099.
 
     0.911
AFE_2553
Pyridine nucleotide-disulfide oxidoreductase; Identified by similarity to PIR:G70335; match to protein family HMM PF00070; match to protein family HMM PF07992.
 
  
 0.875
AFE_2548
Conserved hypothetical protein; Identified by similarity to PIR:A83048.
 
     0.836
AFE_2551
Iron-sulfur cluster-binding protein.
 
     0.821
AFE_2555
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
     0.814
AFE_2552
Conserved hypothetical protein; Identified by similarity to PIR:H70335.
 
     0.806
AFE_2554
Heterodisulfide reductase subunit B, homolog; Identified by similarity to PIR:H90265; match to protein family HMM PF02754.
 
     0.805
sdhC
Succinate dehydrogenase/fumarate reductase, C subunit; Identified by similarity to PIR:T50538; match to protein family HMM PF02754.
 
     0.797
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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