AFE_2567 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_2567

D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family. (388 aa)

Predicted Functional Partners:

AFE_2350

0.917

AFE_2923

0.910

dacB

0.909

AFE_2172

0.909

AFE_2223

0.909

rodA

0.768

mrdA

0.721

mreB

0.718

mreC

0.683

AFE_2564

0.679

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_2172	AFE_2350	AFE_2172	AFE_2350	Beta-lactamase; Identified by match to protein family HMM PF00144.	D-alanyl-D-alanine carboxypeptidase, putative; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.909
AFE_2172	AFE_2567	AFE_2172	AFE_2567	Beta-lactamase; Identified by match to protein family HMM PF00144.	D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	0.909
AFE_2172	AFE_2923	AFE_2172	AFE_2923	Beta-lactamase; Identified by match to protein family HMM PF00144.	D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.909
AFE_2172	dacB	AFE_2172	AFE_1960	Beta-lactamase; Identified by match to protein family HMM PF00144.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by similarity to SP:P24228; match to protein family HMM PF02113; match to protein family HMM TIGR00666.	0.928
AFE_2223	AFE_2350	AFE_2223	AFE_2350	Penicillin-binding protein 1A, putative; Identified by similarity to SP:P31776; match to protein family HMM PF00905; match to protein family HMM PF00912.	D-alanyl-D-alanine carboxypeptidase, putative; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.909
AFE_2223	AFE_2567	AFE_2223	AFE_2567	Penicillin-binding protein 1A, putative; Identified by similarity to SP:P31776; match to protein family HMM PF00905; match to protein family HMM PF00912.	D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	0.909
AFE_2223	AFE_2923	AFE_2223	AFE_2923	Penicillin-binding protein 1A, putative; Identified by similarity to SP:P31776; match to protein family HMM PF00905; match to protein family HMM PF00912.	D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.909
AFE_2223	mrdA	AFE_2223	AFE_2565	Penicillin-binding protein 1A, putative; Identified by similarity to SP:P31776; match to protein family HMM PF00905; match to protein family HMM PF00912.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall.	0.565
AFE_2223	rodA	AFE_2223	AFE_2566	Penicillin-binding protein 1A, putative; Identified by similarity to SP:P31776; match to protein family HMM PF00905; match to protein family HMM PF00912.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.535
AFE_2350	AFE_2172	AFE_2350	AFE_2172	D-alanyl-D-alanine carboxypeptidase, putative; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.909
AFE_2350	AFE_2223	AFE_2350	AFE_2223	D-alanyl-D-alanine carboxypeptidase, putative; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	Penicillin-binding protein 1A, putative; Identified by similarity to SP:P31776; match to protein family HMM PF00905; match to protein family HMM PF00912.	0.909
AFE_2350	AFE_2567	AFE_2350	AFE_2567	D-alanyl-D-alanine carboxypeptidase, putative; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	0.917
AFE_2350	AFE_2923	AFE_2350	AFE_2923	D-alanyl-D-alanine carboxypeptidase, putative; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.923
AFE_2350	dacB	AFE_2350	AFE_1960	D-alanyl-D-alanine carboxypeptidase, putative; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by similarity to SP:P24228; match to protein family HMM PF02113; match to protein family HMM TIGR00666.	0.909
AFE_2564	AFE_2567	AFE_2564	AFE_2567	Rod shape-determining protein MreD, putative; Identified by similarity to SP:P16927; match to protein family HMM TIGR03426.	D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	0.679
AFE_2564	mrdA	AFE_2564	AFE_2565	Rod shape-determining protein MreD, putative; Identified by similarity to SP:P16927; match to protein family HMM TIGR03426.	Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall.	0.829
AFE_2564	mreB	AFE_2564	AFE_2562	Rod shape-determining protein MreD, putative; Identified by similarity to SP:P16927; match to protein family HMM TIGR03426.	Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM PF06723; match to protein family HMM TIGR00904.	0.861
AFE_2564	mreC	AFE_2564	AFE_2563	Rod shape-determining protein MreD, putative; Identified by similarity to SP:P16927; match to protein family HMM TIGR03426.	Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.	0.987
AFE_2564	rodA	AFE_2564	AFE_2566	Rod shape-determining protein MreD, putative; Identified by similarity to SP:P16927; match to protein family HMM TIGR03426.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.888
AFE_2567	AFE_2172	AFE_2567	AFE_2172	D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.909

page 1 of 4

Server load: low (8%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About