Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2644Identified by match to protein family HMM PF00753. (250 aa)    
Predicted Functional Partners:
AFE_2640
Hypothetical protein; Identified by glimmer; putative.
 
     0.792
AFE_0719
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
      
 0.724
AFE_2642
Membrane protein, putative; Identified by match to protein family HMM PF07690.
 
     0.707
AFE_2641
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
       0.605
AFE_2643
Conserved hypothetical protein; Identified by similarity to GB:AAK02599.1.
       0.605
AFE_3010
Polyketide synthase, type I, putative; Identified by similarity to GB:AAK26474.1; match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08659.
 
 
 
 0.597
cydA
Cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:Q09049; match to protein family HMM PF01654.
     
 0.485
hupR
Hydrogenase sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954.
      
 0.464
AFE_1497
Conserved hypothetical protein; Identified by match to protein family HMM PF03573.
      
 0.446
AFE_1694
Conjugal transfer protein; Identified by similarity to SP:P54914.
      
 0.446
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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