AFE_2716 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0254	AFE_1710	AFE_0254	AFE_1710	Membrane protein, putative.	Hypothetical protein; Identified by glimmer; putative.	0.493
AFE_0254	AFE_2716	AFE_0254	AFE_2716	Membrane protein, putative.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF07721.	0.485
AFE_1057	AFE_1211	AFE_1057	AFE_1211	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.531
AFE_1057	AFE_1710	AFE_1057	AFE_1710	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719.	Hypothetical protein; Identified by glimmer; putative.	0.429
AFE_1057	AFE_2716	AFE_1057	AFE_2716	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF07721.	0.489
AFE_1211	AFE_1057	AFE_1211	AFE_1057	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719.	0.531
AFE_1211	AFE_1710	AFE_1211	AFE_1710	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	Hypothetical protein; Identified by glimmer; putative.	0.447
AFE_1211	AFE_1817	AFE_1211	AFE_1817	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	0.523
AFE_1211	AFE_2716	AFE_1211	AFE_2716	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF07721.	0.619
AFE_1211	AFE_2762	AFE_1211	AFE_2762	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.894
AFE_1211	ctpA	AFE_1211	AFE_0524	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	Carboxy-terminal peptidase; Identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.	0.790
AFE_1710	AFE_0254	AFE_1710	AFE_0254	Hypothetical protein; Identified by glimmer; putative.	Membrane protein, putative.	0.493
AFE_1710	AFE_1057	AFE_1710	AFE_1057	Hypothetical protein; Identified by glimmer; putative.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719.	0.429
AFE_1710	AFE_1211	AFE_1710	AFE_1211	Hypothetical protein; Identified by glimmer; putative.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.447
AFE_1710	AFE_1817	AFE_1710	AFE_1817	Hypothetical protein; Identified by glimmer; putative.	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	0.429
AFE_1710	AFE_2716	AFE_1710	AFE_2716	Hypothetical protein; Identified by glimmer; putative.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF07721.	0.458
AFE_1710	AFE_2762	AFE_1710	AFE_2762	Hypothetical protein; Identified by glimmer; putative.	TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.447
AFE_1710	tadC	AFE_1710	AFE_2700	Hypothetical protein; Identified by glimmer; putative.	Tight adherence protein TadC; Identified by similarity to GB:AAL92472.1; match to protein family HMM PF00482.	0.777
AFE_1817	AFE_1211	AFE_1817	AFE_1211	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	TPR domain/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.523
AFE_1817	AFE_1710	AFE_1817	AFE_1710	Sulfotransferase domain protein; Identified by match to protein family HMM PF00685.	Hypothetical protein; Identified by glimmer; putative.	0.429