STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2839Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065. (568 aa)    
Predicted Functional Partners:
AFE_2840
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065; match to protein family HMM PF09095.
 
     0.867
AFE_2841
ROK family protein; Identified by match to protein family HMM PF00480.
 
     0.850
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
     0.834
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.785
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
       0.607
AFE_2837
Hypothetical protein; Identified by glimmer; putative.
       0.550
AFE_2834
SPFH/Band 7 domain protein; Identified by match to protein family HMM PF01145.
       0.529
AFE_2835
Conserved hypothetical protein; Identified by match to protein family HMM PF01957.
       0.529
AFE_1799
Identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094.
 
    0.412
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.