Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2906Conserved hypothetical protein; Identified by similarity to GB:CAE19498.1; match to protein family HMM PF04168. (328 aa)    
Predicted Functional Partners:
AFE_2905
Conserved hypothetical protein; Identified by similarity to SP:Q55587; match to protein family HMM PF04169; match to protein family HMM PF04174.
    0.996
AFE_2907
Transglutaminase-like domain protein; Identified by match to protein family HMM PF01841; match to protein family HMM PF08379.
 
    0.918
AFE_2903
Conserved hypothetical protein; Identified by similarity to PIR:F83429.
 
    0.898
AFE_2904
Hypothetical protein; Identified by glimmer; putative.
       0.500
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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