AFE_2910 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_2910

Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298. (644 aa)

Predicted Functional Partners:

AFE_2912

0.982

AFE_2913

0.982

glgA

0.763

AFE_1802

0.554

AFE_2908

0.514

AFE_3128

0.503

AFE_0630

0.476

wrbA

0.470

AFE_3223

0.470

AFE_1469

0.419

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0630	AFE_2910	AFE_0630	AFE_2910	Identified by match to protein family HMM PF01965.	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	0.476
AFE_1469	AFE_2910	AFE_1469	AFE_2910	Identified by match to protein family HMM PF02562.	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	0.419
AFE_1802	AFE_2910	AFE_1802	AFE_2910	Fructose-bisphosphate aldolase, putative; Identified by similarity to SP:P58315; match to protein family HMM PF01791.	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	0.554
AFE_1802	AFE_3223	AFE_1802	AFE_3223	Fructose-bisphosphate aldolase, putative; Identified by similarity to SP:P58315; match to protein family HMM PF01791.	WrbA family protein; Identified by similarity to SP:P30849; Belongs to the WrbA family.	0.683
AFE_1802	wrbA	AFE_1802	AFE_0460	Fructose-bisphosphate aldolase, putative; Identified by similarity to SP:P58315; match to protein family HMM PF01791.	Trp repressor binding protein; Identified by similarity to SP:P30849; match to protein family HMM PF00258; match to protein family HMM TIGR01755.	0.683
AFE_2908	AFE_2910	AFE_2908	AFE_2910	Hypothetical protein; Identified by glimmer; putative.	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	0.514
AFE_2910	AFE_0630	AFE_2910	AFE_0630	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Identified by match to protein family HMM PF01965.	0.476
AFE_2910	AFE_1469	AFE_2910	AFE_1469	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Identified by match to protein family HMM PF02562.	0.419
AFE_2910	AFE_1802	AFE_2910	AFE_1802	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Fructose-bisphosphate aldolase, putative; Identified by similarity to SP:P58315; match to protein family HMM PF01791.	0.554
AFE_2910	AFE_2908	AFE_2910	AFE_2908	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Hypothetical protein; Identified by glimmer; putative.	0.514
AFE_2910	AFE_2912	AFE_2910	AFE_2912	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Conserved hypothetical protein; Identified by similarity to SP:Q8Z6E7; match to protein family HMM PF04285; Belongs to the UPF0229 family.	0.982
AFE_2910	AFE_2913	AFE_2910	AFE_2913	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Identified by match to protein family HMM PF04293.	0.982
AFE_2910	AFE_3128	AFE_2910	AFE_3128	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Hypothetical protein; Identified by glimmer; putative.	0.503
AFE_2910	AFE_3223	AFE_2910	AFE_3223	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	WrbA family protein; Identified by similarity to SP:P30849; Belongs to the WrbA family.	0.470
AFE_2910	glgA	AFE_2910	AFE_2678	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.763
AFE_2910	wrbA	AFE_2910	AFE_0460	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	Trp repressor binding protein; Identified by similarity to SP:P30849; match to protein family HMM PF00258; match to protein family HMM TIGR01755.	0.470
AFE_2912	AFE_2910	AFE_2912	AFE_2910	Conserved hypothetical protein; Identified by similarity to SP:Q8Z6E7; match to protein family HMM PF04285; Belongs to the UPF0229 family.	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	0.982
AFE_2912	AFE_2913	AFE_2912	AFE_2913	Conserved hypothetical protein; Identified by similarity to SP:Q8Z6E7; match to protein family HMM PF04285; Belongs to the UPF0229 family.	Identified by match to protein family HMM PF04293.	0.995
AFE_2913	AFE_2910	AFE_2913	AFE_2910	Identified by match to protein family HMM PF04293.	Conserved hypothetical protein; Identified by match to protein family HMM PF06798; match to protein family HMM PF08298.	0.982
AFE_2913	AFE_2912	AFE_2913	AFE_2912	Identified by match to protein family HMM PF04293.	Conserved hypothetical protein; Identified by similarity to SP:Q8Z6E7; match to protein family HMM PF04285; Belongs to the UPF0229 family.	0.995

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Databases

Co-occurrence

Textmining

Co-expression

Experiments

Fusion

© STRING Consortium 2026

Credits

Access

Info

About