glnK-1 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0184	amt-1	AFE_0184	AFE_2916	Sensor protein PilS, putative; Identified by similarity to SP:P33639; match to protein family HMM PF00512; match to protein family HMM PF02518.	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	0.416
AFE_0184	amt-2	AFE_0184	AFE_2911	Sensor protein PilS, putative; Identified by similarity to SP:P33639; match to protein family HMM PF00512; match to protein family HMM PF02518.	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	0.416
AFE_0184	amtB	AFE_0184	AFE_1922	Sensor protein PilS, putative; Identified by similarity to SP:P33639; match to protein family HMM PF00512; match to protein family HMM PF02518.	Identified by match to protein family HMM PF00909.	0.416
AFE_0184	glnK-1	AFE_0184	AFE_2915	Sensor protein PilS, putative; Identified by similarity to SP:P33639; match to protein family HMM PF00512; match to protein family HMM PF02518.	Nitrogen regulatory protein P-II 2; Identified by similarity to SP:P38504; match to protein family HMM PF00543; Belongs to the P(II) protein family.	0.461
AFE_2914	amt-1	AFE_2914	AFE_2916	Hypothetical protein; Identified by glimmer; putative.	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	0.483
AFE_2914	glnK-1	AFE_2914	AFE_2915	Hypothetical protein; Identified by glimmer; putative.	Nitrogen regulatory protein P-II 2; Identified by similarity to SP:P38504; match to protein family HMM PF00543; Belongs to the P(II) protein family.	0.605
amt-1	AFE_0184	AFE_2916	AFE_0184	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Sensor protein PilS, putative; Identified by similarity to SP:P33639; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.416
amt-1	AFE_2914	AFE_2916	AFE_2914	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Hypothetical protein; Identified by glimmer; putative.	0.483
amt-1	amt-2	AFE_2916	AFE_2911	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	0.415
amt-1	glnA	AFE_2916	AFE_0466	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Glutamine synthetase, type I; Identified by similarity to SP:P06711; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	0.523
amt-1	glnK-1	AFE_2916	AFE_2915	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Nitrogen regulatory protein P-II 2; Identified by similarity to SP:P38504; match to protein family HMM PF00543; Belongs to the P(II) protein family.	0.927
amt-1	ntrB	AFE_2916	AFE_2902	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Nitrogen regulation protein NR(II); Identified by similarity to SP:P06218; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08448.	0.482
amt-2	AFE_0184	AFE_2911	AFE_0184	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Sensor protein PilS, putative; Identified by similarity to SP:P33639; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.416
amt-2	amt-1	AFE_2911	AFE_2916	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	0.415
amt-2	glnA	AFE_2911	AFE_0466	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Glutamine synthetase, type I; Identified by similarity to SP:P06711; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	0.625
amt-2	glnK-1	AFE_2911	AFE_2915	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Nitrogen regulatory protein P-II 2; Identified by similarity to SP:P38504; match to protein family HMM PF00543; Belongs to the P(II) protein family.	0.935
amt-2	ntrB	AFE_2911	AFE_2902	Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.	Nitrogen regulation protein NR(II); Identified by similarity to SP:P06218; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08448.	0.482
amtB	AFE_0184	AFE_1922	AFE_0184	Identified by match to protein family HMM PF00909.	Sensor protein PilS, putative; Identified by similarity to SP:P33639; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.416
amtB	glnA	AFE_1922	AFE_0466	Identified by match to protein family HMM PF00909.	Glutamine synthetase, type I; Identified by similarity to SP:P06711; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.	0.615
amtB	glnK-1	AFE_1922	AFE_2915	Identified by match to protein family HMM PF00909.	Nitrogen regulatory protein P-II 2; Identified by similarity to SP:P38504; match to protein family HMM PF00543; Belongs to the P(II) protein family.	0.965