Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ctrDCapsule polysaccharide exporter, ATP-binding protein; Identified by similarity to SP:P32016; match to protein family HMM PF00005. (217 aa)    
Predicted Functional Partners:
ctrC
Capsule polysaccharide exporter, inner-membrane protein CtrC; Identified by similarity to SP:P32015; match to protein family HMM PF01061.
 0.999
AFE_2961
Capsule polysaccharide export inner-membrane protein; Identified by similarity to SP:P32014.
 
 
 0.996
AFE_3012
Capsule polysaccharide biosynthesis protein; Identified by match to protein family HMM PF05159.
 
  
 0.965
AFE_2296
Conserved domain protein; Identified by similarity to GB:CAD64331.1.
  
 
 0.954
AFE_3235
ABC-2 type transporter, permease protein, NodJ family; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291.
  
 
 0.954
AFE_2975
Capsule polysaccharide export protein, BexD/CtrA/VexA family; Identified by similarity to SP:P22236; match to protein family HMM PF02563.
 
  
 0.931
AFE_3013
Capsule polysaccharide modification protein; Identified by similarity to SP:Q05014; match to protein family HMM PF05159.
 
   
 0.824
AFE_1339
Polysaccharide biosynthesis/export domain protein; Identified by match to protein family HMM PF02563.
  
  
 0.807
comF
Competence protein; Identified by similarity to SP:P31773.
   
    0.757
AFE_2976
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
 
 
 0.679
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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