Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2965Hypothetical protein; Identified by glimmer; putative. (213 aa)    
Predicted Functional Partners:
AFE_2967
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
       0.705
AFE_2964
Methyltransferase, FkbM family domain protein; Identified by match to protein family HMM TIGR01444.
       0.610
AFE_2968
Hypothetical protein; Identified by glimmer; putative.
       0.499
AFE_2969
Hypothetical protein; Identified by glimmer; putative.
       0.499
ctrC
Capsule polysaccharide exporter, inner-membrane protein CtrC; Identified by similarity to SP:P32015; match to protein family HMM PF01061.
       0.434
ctrD
Capsule polysaccharide exporter, ATP-binding protein; Identified by similarity to SP:P32016; match to protein family HMM PF00005.
       0.434
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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