Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2987Peptide ABC transporter, periplasmic peptide-binding protein; Identified by similarity to SP:P42061; match to protein family HMM PF00496. (543 aa)    
Predicted Functional Partners:
AFE_2990
Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.998
AFE_2991
Peptide ABC transporter, permease protein; Identified by similarity to SP:P50989; match to protein family HMM PF00528.
 
 0.998
AFE_2989
Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.991
AFE_2992
Peptide ABC transporter, periplasmic peptide-binding protein; Identified by similarity to SP:P42061; match to protein family HMM PF00496.
 
  
 
0.939
AFE_2988
Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.920
AFE_2986
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.705
AFE_2985
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
   
 0.611
AFE_2019
Conserved domain protein.
  
     0.588
AFE_2018
Conserved hypothetical protein; Identified by similarity to PIR:C70988.
  
     0.538
AFE_0778
Conserved domain protein.
  
     0.455
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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