Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_2991Peptide ABC transporter, permease protein; Identified by similarity to SP:P50989; match to protein family HMM PF00528. (319 aa)    
Predicted Functional Partners:
AFE_2990
Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.999
AFE_2987
Peptide ABC transporter, periplasmic peptide-binding protein; Identified by similarity to SP:P42061; match to protein family HMM PF00496.
 
 0.998
AFE_2989
Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.998
AFE_2992
Peptide ABC transporter, periplasmic peptide-binding protein; Identified by similarity to SP:P42061; match to protein family HMM PF00496.
 
 0.998
AFE_2988
Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.986
phnK
Phosphonate ABC transporter, ATP-binding protein PhnK; Identified by similarity to SP:P16678; match to protein family HMM PF00005; match to protein family HMM TIGR02323.
  
     0.446
AFE_2993
Conserved hypothetical protein; Identified by similarity to GB:AAM36869.1.
       0.405
AFE_2994
Conserved hypothetical protein; Identified by similarity to GB:AAM36869.1.
       0.405
AFE_2995
Conserved domain protein; Identified by similarity to GB:CAD11970.1.
       0.405
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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