Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cbbQ-1CbbQ protein; Identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406. (267 aa)    
Predicted Functional Partners:
AFE_3054
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
 
 0.950
AFE_1677
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
 
 0.930
AFE_2535
Von Willebrand factor type A domain protein.
 
 
 0.879
AFE_2157
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
 
 0.874
cbbS-1
Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF00101.
  
  
 0.853
cbbP
Phosphoribulokinase; Identified by similarity to SP:P12033; match to protein family HMM PF00485.
      
 0.472
cbbR
Rubisco operon transcriptional regulator; Identified by similarity to SP:Q06610; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
   
  
 0.472
cbbL-1
Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.467
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.466
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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