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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_3142Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (397 aa)    
Predicted Functional Partners:
AFE_3141
Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
     
 0.844
AFE_3144
Membrane protein, putative.
     
 0.813
cyoE-2
Protoheme IX farnesyltransferase; Identified by similarity to SP:P56938; match to protein family HMM PF01040; match to protein family HMM TIGR01473.
  
    0.728
AFE_3139
Hypothetical protein; Identified by glimmer; putative.
     
 0.689
AFE_3138
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
     
 0.597
cyoE-1
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
  
 0.420
AFE_3136
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
      
 0.408
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.