cyoE-2 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_3139	AFE_3141	AFE_3139	AFE_3141	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	0.511
AFE_3139	AFE_3142	AFE_3139	AFE_3142	Hypothetical protein; Identified by glimmer; putative.	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.853
AFE_3139	AFE_3144	AFE_3139	AFE_3144	Hypothetical protein; Identified by glimmer; putative.	Membrane protein, putative.	0.840
AFE_3139	cyoE-2	AFE_3139	AFE_3143	Hypothetical protein; Identified by glimmer; putative.	Protoheme IX farnesyltransferase; Identified by similarity to SP:P56938; match to protein family HMM PF01040; match to protein family HMM TIGR01473.	0.467
AFE_3141	AFE_3139	AFE_3141	AFE_3139	Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	Hypothetical protein; Identified by glimmer; putative.	0.511
AFE_3141	AFE_3142	AFE_3141	AFE_3142	Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.746
AFE_3141	AFE_3144	AFE_3141	AFE_3144	Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	Membrane protein, putative.	0.670
AFE_3141	cyoE-2	AFE_3141	AFE_3143	Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	Protoheme IX farnesyltransferase; Identified by similarity to SP:P56938; match to protein family HMM PF01040; match to protein family HMM TIGR01473.	0.698
AFE_3142	AFE_3139	AFE_3142	AFE_3139	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Hypothetical protein; Identified by glimmer; putative.	0.853
AFE_3142	AFE_3141	AFE_3142	AFE_3141	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	0.746
AFE_3142	AFE_3144	AFE_3142	AFE_3144	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Membrane protein, putative.	0.911
AFE_3142	cyoE-2	AFE_3142	AFE_3143	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Protoheme IX farnesyltransferase; Identified by similarity to SP:P56938; match to protein family HMM PF01040; match to protein family HMM TIGR01473.	0.729
AFE_3144	AFE_3139	AFE_3144	AFE_3139	Membrane protein, putative.	Hypothetical protein; Identified by glimmer; putative.	0.840
AFE_3144	AFE_3141	AFE_3144	AFE_3141	Membrane protein, putative.	Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	0.670
AFE_3144	AFE_3142	AFE_3144	AFE_3142	Membrane protein, putative.	Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.911
AFE_3144	cyoE-2	AFE_3144	AFE_3143	Membrane protein, putative.	Protoheme IX farnesyltransferase; Identified by similarity to SP:P56938; match to protein family HMM PF01040; match to protein family HMM TIGR01473.	0.741
coxA	coxB	AFE_3149	AFE_3150	Cytochrome c oxidase, aa3-type, subunit I; Identified by similarity to GB:CAA07035.1; match to protein family HMM PF00115.	Cytochrome c oxidase, aa3-type, subunit II; Identified by similarity to GB:CAA07034.1; match to protein family HMM PF00116.	0.999
coxA	cyoA	AFE_3149	AFE_0631	Cytochrome c oxidase, aa3-type, subunit I; Identified by similarity to GB:CAA07035.1; match to protein family HMM PF00115.	Cytochrome o ubiquinol oxidase, subunit II; Identified by similarity to SP:P18400; match to protein family HMM PF00116; match to protein family HMM PF06481.	0.998
coxA	cyoB	AFE_3149	AFE_0632	Cytochrome c oxidase, aa3-type, subunit I; Identified by similarity to GB:CAA07035.1; match to protein family HMM PF00115.	Cytochrome o ubiquinol oxidase, subunit I; Identified by similarity to SP:P18401; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.	0.924
coxA	cyoC	AFE_3149	AFE_0633	Cytochrome c oxidase, aa3-type, subunit I; Identified by similarity to GB:CAA07035.1; match to protein family HMM PF00115.	Cytochrome o ubiquinol oxidase, subunit III; Identified by similarity to SP:P18402.	0.999