Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cyc2Cytochrome c; Identified by similarity to GB:CAA07031.1. (485 aa)    
Predicted Functional Partners:
cyc1
Cytochrome c552; Identified by similarity to SP:P74917; match to protein family HMM PF00034.
     
 0.932
coxB
Cytochrome c oxidase, aa3-type, subunit II; Identified by similarity to GB:CAA07034.1; match to protein family HMM PF00116.
 
   
 0.854
AFE_3229
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.767
AFE_2935
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.765
AFE_2998
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.765
AFE_0763
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.764
AFE_0620
Hypothetical protein; Identified by glimmer; putative.
  
     0.737
cycA-2
Cytochrome c4; Identified by match to protein family HMM PF00034.
      
 0.724
iro
Iron oxidase; Identified by similarity to SP:P50500; match to protein family HMM TIGR01409.
      
 0.724
cycA-1
Cytochrome c4; Identified by match to protein family HMM PF00034.
      
 0.724
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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