Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
AFE_3177ISAfe9, transposase; Identified by match to protein family HMM PF00665. (494 aa)    
Predicted Functional Partners:
AFE_3176
ISAfe9, transposition helper protein; Identified by match to protein family HMM PF01695.
 
     0.947
AFE_2413
Transposase, degenerate; Identified by match to protein family HMM PF01695.
  
     0.751
AFE_1373
Transposition helper protein; Identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483.
  
     0.733
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.732
AFE_1566
DNA replication protein DnaC, putative; Identified by similarity to SP:P07905; match to protein family HMM PF01695.
 
     0.600
AFE_1330
ISAfe2, transposase; Required for the transposition of the insertion element.
  
     0.539
AFE_1597
Transposase, degenerate.
 
 
 0.497
AFE_3178
Hypothetical protein; Identified by glimmer; putative.
       0.495
AFE_3179
Hypothetical protein; Identified by glimmer; putative.
       0.495
AFE_3180
Hypothetical protein; Identified by glimmer; putative.
       0.495
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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