tnsC-2 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tnsC-2

Tn5468, transposition protein C; Identified by similarity to PIR:T45496. (551 aa)

Predicted Functional Partners:

tnsA-2

0.973

tnsB-2

0.965

tnsD-2

0.945

tnsA-1

0.886

tnsB-1

0.854

tnsD-1

0.780

AFE_2505

0.748

AFE_3195

0.721

glmS

0.493

AFE_3157

0.446

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_2505	tnsA-1	AFE_2505	AFE_1201	Transposon, transposition protein B, putative; Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665.	Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.	0.626
AFE_2505	tnsA-2	AFE_2505	AFE_3199	Transposon, transposition protein B, putative; Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665.	Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.	0.620
AFE_2505	tnsC-2	AFE_2505	AFE_3197	Transposon, transposition protein B, putative; Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665.	Tn5468, transposition protein C; Identified by similarity to PIR:T45496.	0.748
AFE_2505	tnsD-1	AFE_2505	AFE_1204	Transposon, transposition protein B, putative; Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665.	Tn5468, transposition protein D; Identified by similarity to PIR:T45497.	0.572
AFE_2505	tnsD-2	AFE_2505	AFE_3196	Transposon, transposition protein B, putative; Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665.	Tn5468, transposition protein D; Identified by similarity to PIR:T45497.	0.572
AFE_3157	tnsC-2	AFE_3157	AFE_3197	ISAfe6, transposase, degenerate; Identified by similarity to GB:AAK61303.1.	Tn5468, transposition protein C; Identified by similarity to PIR:T45496.	0.446
AFE_3195	glmS	AFE_3195	AFE_3200	Tn5468, orf5; Identified by similarity to PIR:T45498.	Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.512
AFE_3195	tnsA-2	AFE_3195	AFE_3199	Tn5468, orf5; Identified by similarity to PIR:T45498.	Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.	0.736
AFE_3195	tnsB-2	AFE_3195	AFE_3198	Tn5468, orf5; Identified by similarity to PIR:T45498.	Identified by similarity to PIR:T45495; match to protein family HMM PF00665.	0.716
AFE_3195	tnsC-2	AFE_3195	AFE_3197	Tn5468, orf5; Identified by similarity to PIR:T45498.	Tn5468, transposition protein C; Identified by similarity to PIR:T45496.	0.721
AFE_3195	tnsD-2	AFE_3195	AFE_3196	Tn5468, orf5; Identified by similarity to PIR:T45498.	Tn5468, transposition protein D; Identified by similarity to PIR:T45497.	0.742
glmS	AFE_3195	AFE_3200	AFE_3195	Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Tn5468, orf5; Identified by similarity to PIR:T45498.	0.512
glmS	tnsA-2	AFE_3200	AFE_3199	Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.	0.657
glmS	tnsB-2	AFE_3200	AFE_3198	Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Identified by similarity to PIR:T45495; match to protein family HMM PF00665.	0.481
glmS	tnsC-2	AFE_3200	AFE_3197	Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Tn5468, transposition protein C; Identified by similarity to PIR:T45496.	0.493
glmS	tnsD-2	AFE_3200	AFE_3196	Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Tn5468, transposition protein D; Identified by similarity to PIR:T45497.	0.540
tnsA-1	AFE_2505	AFE_1201	AFE_2505	Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.	Transposon, transposition protein B, putative; Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665.	0.626
tnsA-1	tnsB-1	AFE_1201	AFE_1202	Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.	Tn5468, transposase protein B; Identified by similarity to PIR:T45495.	0.954
tnsA-1	tnsB-2	AFE_1201	AFE_3198	Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.	Identified by similarity to PIR:T45495; match to protein family HMM PF00665.	0.811
tnsA-1	tnsC-2	AFE_1201	AFE_3197	Identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722.	Tn5468, transposition protein C; Identified by similarity to PIR:T45496.	0.886