Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_3235ABC-2 type transporter, permease protein, NodJ family; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291. (258 aa)    
Predicted Functional Partners:
AFE_3236
ABC transporter, ATP-binding protein, NodI family; Identified by match to protein family HMM PF00005.
 
  
  0.988
ctrD
Capsule polysaccharide exporter, ATP-binding protein; Identified by similarity to SP:P32016; match to protein family HMM PF00005.
  
 
 0.954
AFE_2961
Capsule polysaccharide export inner-membrane protein; Identified by similarity to SP:P32014.
  
  
 0.778
AFE_3012
Capsule polysaccharide biosynthesis protein; Identified by match to protein family HMM PF05159.
  
  
 0.777
AFE_3237
Conserved hypothetical protein; Identified by similarity to GB:AAO91263.1.
       0.773
AFE_1339
Polysaccharide biosynthesis/export domain protein; Identified by match to protein family HMM PF02563.
 
  
 0.616
AFE_2975
Capsule polysaccharide export protein, BexD/CtrA/VexA family; Identified by similarity to SP:P22236; match to protein family HMM PF02563.
 
  
 0.608
AFE_3238
Ferredoxin, putative; Identified by similarity to SP:P07324.
       0.597
AFE_3234
Hypothetical protein; Identified by glimmer; putative.
       0.535
AFE_3036
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 
0.502
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.