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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_3296Major facilitator family transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (458 aa)    
Predicted Functional Partners:
AFE_2457
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
  
     0.586
AFE_1782
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
  
     0.580
AFE_0439
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
  
     0.571
AFE_2659
Amino acid permease family protein; Identified by match to protein family HMM PF00324.
  
     0.560
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
       0.495
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.495
AFE_2307
Conserved domain protein; Identified by similarity to GB:AAO90256.1.
  
  
 0.480
AFE_1716
GTP-binding protein.
  
    0.464
AFE_0105
Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.
  
     0.457
AFE_1028
Conserved hypothetical protein; Identified by similarity to GB:CAC11876.1.
  
    0.428
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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