STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0024DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. (795 aa)    
Predicted Functional Partners:
DET0025
Competence protein ComEA, putative; Identified by similarity to SP:P39694.
 
  
 0.952
DET0718
DNA processing protein DprA, putative; Identified by match to protein family HMM TIGR00732.
 
  
 0.900
DET1458
comF family protein, putative; Identified by similarity to SP:P39147.
 
  
 0.855
DET1362
Type IV prepilin leader peptidase family protein; Identified by similarity to SP:P15378.
 
  
 0.798
DET1352
Pilin biogenesis protein, putative; Identified by similarity to SP:P45793.
   
  
 0.787
DET0047
DNA polymerase III delta subunit-related protein; Identified by similarity to SP:P28630.
 
   
 0.758
DET0986
Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.
 
  
 0.728
DET0439
FtsK/SpoIIIE family protein; Belongs to the FtsK/SpoIIIE/SftA family.
 
  
 0.723
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.709
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.703
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.