STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0028Universal stress protein family. (142 aa)    
Predicted Functional Partners:
DET0027
Potassium uptake protein, putative; Identified by similarity to SP:Q53949.
  
    0.841
DET0026
Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.
 
    0.838
DET0030
Potassium uptake protein TrkA, putative; Identified by similarity to SP:P23868.
  
    0.636
DET1631
TPR domain protein; Identified by match to protein family HMM PF00515.
  
  
 0.579
DET0029
Trk system potassium uptake protein, putative; Identified by similarity to SP:P21166.
       0.565
DET0031
Hypothetical protein; Identified by Glimmer2; putative.
       0.565
DET0024
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
       0.464
DET0025
Competence protein ComEA, putative; Identified by similarity to SP:P39694.
       0.462
DET0352
Conserved hypothetical protein; Identified by similarity to GB:BAC73118.1.
  
    0.422
ogt
methylated-DNA--protein-cysteine methyltransferase; Identified by match to protein family HMM TIGR00589.
   
    0.410
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.