DET0028 protein (Dehalococcoides mccartyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DET0028

Universal stress protein family. (142 aa)

Predicted Functional Partners:

DET0027

0.835

DET0026

0.831

DET0030

0.616

DET1631

0.573

DET0029

0.565

DET0031

0.565

DET0024

0.462

DET0025

0.462

DET0352

0.424

DET0514

0.407

Your Current Organism:

Dehalococcoides mccartyi

NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DET0024	DET0025	DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	Competence protein ComEA, putative; Identified by similarity to SP:P39694.	0.955
DET0024	DET0026	DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	0.472
DET0024	DET0027	DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	Potassium uptake protein, putative; Identified by similarity to SP:Q53949.	0.472
DET0024	DET0028	DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	Universal stress protein family.	0.462
DET0024	DET0029	DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	Trk system potassium uptake protein, putative; Identified by similarity to SP:P21166.	0.408
DET0025	DET0024	Competence protein ComEA, putative; Identified by similarity to SP:P39694.	DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	0.955
DET0025	DET0026	Competence protein ComEA, putative; Identified by similarity to SP:P39694.	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	0.462
DET0025	DET0027	Competence protein ComEA, putative; Identified by similarity to SP:P39694.	Potassium uptake protein, putative; Identified by similarity to SP:Q53949.	0.462
DET0025	DET0028	Competence protein ComEA, putative; Identified by similarity to SP:P39694.	Universal stress protein family.	0.462
DET0026	DET0024	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	0.472
DET0026	DET0025	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	Competence protein ComEA, putative; Identified by similarity to SP:P39694.	0.462
DET0026	DET0027	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	Potassium uptake protein, putative; Identified by similarity to SP:Q53949.	0.833
DET0026	DET0028	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	Universal stress protein family.	0.831
DET0026	DET0029	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	Trk system potassium uptake protein, putative; Identified by similarity to SP:P21166.	0.951
DET0026	DET0030	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	Potassium uptake protein TrkA, putative; Identified by similarity to SP:P23868.	0.673
DET0026	DET0031	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	Hypothetical protein; Identified by Glimmer2; putative.	0.565
DET0027	DET0024	Potassium uptake protein, putative; Identified by similarity to SP:Q53949.	DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	0.472
DET0027	DET0025	Potassium uptake protein, putative; Identified by similarity to SP:Q53949.	Competence protein ComEA, putative; Identified by similarity to SP:P39694.	0.462
DET0027	DET0026	Potassium uptake protein, putative; Identified by similarity to SP:Q53949.	Potassium uptake protein, putative; Identified by similarity to SP:P23868; match to protein family HMM PF02080.	0.833
DET0027	DET0028	Potassium uptake protein, putative; Identified by similarity to SP:Q53949.	Universal stress protein family.	0.835

page 1 of 3

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About