STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltAGlutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM TIGR01316. (465 aa)    
Predicted Functional Partners:
DET0037
PyrK family protein.
 
 0.998
gltB
Glutamate synthase, alpha subunit, putative; Belongs to the glutamate synthase family.
 
 
 0.993
pyrK
Dihydroorotate dehydrogenase, electron transfer subunit; Identified by similarity to SP:P25983.
 
 
 0.958
DET0864
Hydrogenase subunit HymB, putative; Identified by similarity to GP:14250934.
    
 0.951
DET0147
[Fe] hydrogenase, large subunit HymC, putative; Identified by similarity to GP:14250935; match to protein family HMM PF02256.
    
 0.948
DET1127
Conserved hypothetical protein; Identified by similarity to OMNI:TM0394.
 
 
 0.933
DET1130
Glutamine amidotransferase, class II; Identified by similarity to SP:O29310; match to protein family HMM PF00310.
  
 
 0.933
glnA
Glutamine synthetase, type I; Identified by similarity to SP:Q59812; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; Belongs to the glutamine synthetase family.
  
 
 0.917
carB
Carbamoyl-phosphate synthase, large subunit; Identified by similarity to SP:P25994; match to protein family HMM TIGR01369; Belongs to the CarB family.
   
 
 0.909
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.907
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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