STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0048Membrane protein, putative; Identified by similarity to GP:10198137. (203 aa)    
Predicted Functional Partners:
DET0047
DNA polymerase III delta subunit-related protein; Identified by similarity to SP:P28630.
       0.773
DET0538
ATP-binding protein, DnaC family; Identified by similarity to SP:P07905.
  
    0.693
DET0049
ROK family protein; Identified by match to protein family HMM PF00480.
       0.666
DET0783
Translin family protein; Identified by similarity to OMNI:NTL02MA0091; match to protein family HMM PF01997.
  
     0.636
DET0046
GTP-binding protein, putative.
       0.477
DET0524
PBS lyase HEAT-like repeat domain protein.
  
     0.450
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.441
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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