Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DET0065Virulence-related protein; Identified by similarity to GP:3482866. (286 aa)    
Predicted Functional Partners:
DET0066
DNA methylase; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.846
DET1090
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.784
DET1089
Virulence-related protein; Identified by similarity to GP:3482867.
 
     0.778
DET0073
Conserved hypothetical protein; Identified by similarity to OMNI:AF2353.
  
    0.769
DET1093
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.750
DET1095
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.719
DET1068
Site-specific recombinase, phage integrase family, truncation.
  
     0.711
DET0069
HNH endonuclease domain protein.
 
    0.683
DET1103
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.683
DET0070
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.670
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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