Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DET0073Conserved hypothetical protein; Identified by similarity to OMNI:AF2353. (139 aa)    
Predicted Functional Partners:
DET0065
Virulence-related protein; Identified by similarity to GP:3482866.
  
    0.769
DET1091
Virulence-related protein; Identified by similarity to GP:3482866.
  
    0.767
DET1103
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.684
DET1090
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.676
glyS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
    
  0.663
ssb
Single-strand binding protein; Identified by match to protein family HMM TIGR00621.
   
 0.659
DET0074
DNA-dependent DNA polymerase, family A; Identified by similarity to SP:P06225.
 
     0.614
DET1093
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.590
DET1107
Conserved domain protein; Identified by similarity to GP:29341852.
  
  
 0.537
DET1089
Virulence-related protein; Identified by similarity to GP:3482867.
  
     0.507
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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