STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0090Radical SAM domain protein. (271 aa)    
Predicted Functional Partners:
DET0089
Radical SAM domain protein.
 
    
0.791
DET0088
Reductive dehalogenase domain protein; Identified by similarity to GP:8163916.
       0.535
DET0352
Conserved hypothetical protein; Identified by similarity to GB:BAC73118.1.
  
     0.523
DET0114
ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P46904.
  
     0.513
DET0091
Hypothetical protein; Identified by Glimmer2; putative.
       0.477
DET0115
ABC transporter, permease protein, putative; Identified by similarity to SP:P75774; similarity to OMNI:NTL01BMA0802.
  
     0.451
DET1313
Protein of unknown function /conserved hypothetical protein TIGR00296; Identified by match to protein family HMM PF01871; match to protein family HMM PF01875; match to protein family HMM TIGR00296; Belongs to the MEMO1 family.
 
     0.449
DET0087
Hypothetical protein; Identified by Glimmer2; putative.
       0.405
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.