STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0097Iron dependent repressor, putative; Identified by match to protein family HMM PF02742. (238 aa)    
Predicted Functional Partners:
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
  
 0.984
DET0096
Identified by match to protein family HMM PF04023.
 
  
 0.874
DET1503
Ferrous iron transport protein B, putative; Identified by similarity to SP:P33650; match to protein family HMM TIGR00231.
 
  
 0.869
DET0094
Hypothetical protein; Identified by Glimmer2; putative.
       0.741
DET0953
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00403; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
     
 0.688
DET0633
Cation ABC transporter, permease protein; Identified by similarity to GP:5019735.
  
  
 0.665
DET0631
Cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.658
DET0632
Cation ABC transporter, ATP-binding protein; Identified by similarity to SP:Q9XDA6.
  
  
 0.645
DET0020
Transcriptional regulator, Fur family; Identified by similarity to OMNI:NTL01TT1159; Belongs to the Fur family.
  
  
 0.644
DET0630
Transcriptional regulator, Fur family; Belongs to the Fur family.
  
  
 0.644
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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