STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0131Response regulator; Identified by similarity to SP:Q00934. (130 aa)    
Predicted Functional Partners:
DET0127
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 
 0.826
DET0625
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 
 0.587
DET0130
Response regulator; Identified by similarity to SP:P13792.
   
   0.566
DET0129
Conserved hypothetical protein TIGR00149; Identified by similarity to OMNI:TM1872; match to protein family HMM PF01894.
       0.547
DET0132
Rhomboid family protein.
       0.481
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source.
       0.466
DET1016
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM TIGR00229; match to protein family HMM TIGR01612.
 
 
 
0.465
DET1293
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 
 0.453
DET0624
Response regulator; Identified by similarity to OMNI:TM0186; match to protein family HMM TIGR00277.
 
 
 0.408
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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