Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DET0134Hypothetical protein; Identified by Glimmer2; putative. (139 aa)    
Predicted Functional Partners:
DET1360
General secretion family protein; Identified by similarity to SP:P45773.
 
 
0.924
gspE
Type II secretion system protein GspE; Identified by similarity to GP:4139237; match to protein family HMM PF05157.
  
 
 0.767
DET1352
Pilin biogenesis protein, putative; Identified by similarity to SP:P45793.
  
  
 0.761
DET0024
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
  
 0.682
DET0133
Conserved domain protein; Identified by similarity to OMNI:TM1786.
       0.568
DET0135
DNA-binding response regulator; Identified by similarity to GB:BAA02453.1.
       0.532
DET0136
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL01BH3159; match to protein family HMM TIGR00229.
       0.532
ssb
Single-strand binding protein; Identified by match to protein family HMM TIGR00621.
  
    0.521
DET0025
Competence protein ComEA, putative; Identified by similarity to SP:P39694.
  
  
 0.462
DET1362
Type IV prepilin leader peptidase family protein; Identified by similarity to SP:P15378.
  
  
 0.414
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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