Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DET0136Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL01BH3159; match to protein family HMM TIGR00229. (581 aa)    
Predicted Functional Partners:
DET0135
DNA-binding response regulator; Identified by similarity to GB:BAA02453.1.
 
 0.989
DET1126
Transcriptional regulator; Identified by similarity to SP:Q05943.
  
 0.935
DET0130
Response regulator; Identified by similarity to SP:P13792.
 
 0.839
DET0127
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 
0.793
DET1058
DNA-binding response regulator.
 
 
 0.785
DET1016
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM TIGR00229; match to protein family HMM TIGR01612.
 
 
 
0.766
DET1231
DNA-binding response regulator.
 
 
 0.708
DET1294
DNA-binding response regulator; Identified by match to protein family HMM TIGR01764.
 
 
 
 0.698
DET0232
DNA-binding response regulator.
 
 
 0.662
DET0177
DNA-binding response regulator.
 
 
 0.652
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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