STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mgsAMethylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. (144 aa)    
Predicted Functional Partners:
mgsA-2
Methylglyoxal synthase, putative; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
  
 
0.905
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
  
    0.689
DET0334
Identified by match to protein family HMM PF01743.
  
    0.654
DET0409
polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.654
DET0138
Phosphate ABC transporter, phosphate-binding protein; Identified by match to protein family HMM TIGR02136.
       0.570
DET0139
Phosphate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     
 0.498
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.478
DET0135
DNA-binding response regulator; Identified by similarity to GB:BAA02453.1.
       0.453
DET0136
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL01BH3159; match to protein family HMM TIGR00229.
       0.453
DET0140
Phosphate ABC transporter, permease protein.
       0.426
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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