Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DET0171Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229. (503 aa)    
Predicted Functional Partners:
DET0170
DNA-binding response regulator.
 
 
 0.967
DET1016
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM TIGR00229; match to protein family HMM TIGR01612.
 
 
 
0.948
DET0130
Response regulator; Identified by similarity to SP:P13792.
 
 0.896
DET0127
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 
0.888
DET0232
DNA-binding response regulator.
 
 
 0.883
DET0177
DNA-binding response regulator.
 
 
 0.880
DET0304
Response regulator.
 
 
 0.871
DET1058
DNA-binding response regulator.
 
 0.867
DET1540
DNA-binding response regulator; Identified by similarity to SP:P21866.
 
 
 0.863
DET0135
DNA-binding response regulator; Identified by similarity to GB:BAA02453.1.
 
 0.862
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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