STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0177DNA-binding response regulator. (226 aa)    
Predicted Functional Partners:
DET0178
Sensor histidine kinase; Identified by similarity to SP:P35164.
   0.957
DET1524
DNA binding response regulator.
  
  
 
0.924
DET0170
DNA-binding response regulator.
  
  
 
0.917
DET0171
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 0.912
DET0315
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL02MA3318; match to protein family HMM TIGR00229.
 
 0.900
DET1539
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL02MA1116; match to protein family HMM TIGR00229.
 
 0.896
DET0301
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 0.892
DET0305
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL01MM3099; match to protein family HMM TIGR00229.
 
 0.892
DET0233
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL02MA3318; match to protein family HMM TIGR00229.
 
 0.888
DET0625
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 0.882
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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