Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DET0178Sensor histidine kinase; Identified by similarity to SP:P35164. (596 aa)    
Predicted Functional Partners:
DET0177
DNA-binding response regulator.
 
   0.949
DET1016
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM TIGR00229; match to protein family HMM TIGR01612.
 
 
 
 0.872
DET0130
Response regulator; Identified by similarity to SP:P13792.
  
   0.802
DET0625
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 0.800
DET0232
DNA-binding response regulator.
  
   0.792
DET1294
DNA-binding response regulator; Identified by match to protein family HMM TIGR01764.
 
 
 
 0.778
DET1293
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
  
 
   0.777
DET0179
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DET0304
Response regulator.
  
   0.771
DET0170
DNA-binding response regulator.
  
   0.765
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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