STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0201Glycosyl hydrolase domain protein; Identified by similarity to SP:P71243. (392 aa)    
Predicted Functional Partners:
DET0202
Histidinol-phosphate phosphatase family protein/glycosyl transferase, group 2 family protein; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
  
  
 0.792
DET0209
Membrane protein, putative.
  
  
 0.649
DET0203
Glycosyl transferase, group 2 family protein.
 
   
 0.636
DET0205
D-glycero-D-manno-heptose 1-phosphate guanosyltransferase; Identified by similarity to GP:13491145.
  
   0.630
DET0204
NAD-dependent epimerase/dehydratase family protein.
  
  
 0.624
DET0206
D-glycero-D-manno-heptose 7-phosphate kinase, putative; Identified by similarity to GP:13491143.
  
    0.587
DET1141
Glycosyl transferase/polysaccharide deacetylase family protein; Identified by match to protein family HMM PF01522.
 
   
 0.582
gmhA
Phosphoheptose isomerase; Identified by similarity to SP:Q9AGY7.
  
  
 0.556
groEL
Co-chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
     
 0.511
DET0211
Glycosyl transferase, group 1 family protein.
 
     0.473
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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