Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DET0212Conserved domain protein; Identified by similarity to OMNI:SO3266. (231 aa)    
Predicted Functional Partners:
DET0210
Conserved domain protein.
     
 0.783
DET0213
Conserved domain protein; Identified by similarity to OMNI:NTL01MT00337.
       0.783
DET0211
Glycosyl transferase, group 1 family protein.
     
 0.775
DET0202
Histidinol-phosphate phosphatase family protein/glycosyl transferase, group 2 family protein; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
  
 
 0.652
DET0208
Glycosyl transferase, group 2 family protein.
 
   
 0.615
DET0209
Membrane protein, putative.
     
 0.555
gmhA
Phosphoheptose isomerase; Identified by similarity to SP:Q9AGY7.
   
 
 0.524
DET1141
Glycosyl transferase/polysaccharide deacetylase family protein; Identified by match to protein family HMM PF01522.
     
 0.472
DET0204
NAD-dependent epimerase/dehydratase family protein.
     
 0.464
DET0206
D-glycero-D-manno-heptose 7-phosphate kinase, putative; Identified by similarity to GP:13491143.
       0.463
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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