STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0241Radical SAM domain protein. (256 aa)    
Predicted Functional Partners:
DET0240
Tetrapyrrole methylase family protein.
 
     0.686
DET0242
Conserved hypothetical protein.
       0.671
DET0243
Radical SAM domain protein.
      
0.671
nrd-1
Ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.666
cobA-1
cob(I)alamin adenosyltransferase; Identified by similarity to SP:P13040.
       0.666
DET1313
Protein of unknown function /conserved hypothetical protein TIGR00296; Identified by match to protein family HMM PF01871; match to protein family HMM PF01875; match to protein family HMM TIGR00296; Belongs to the MEMO1 family.
 
     0.641
cobD-1
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.636
DET0239
Radical SAM domain protein.
 
    
0.632
DET0247
Conserved hypothetical protein; Identified by similarity to OMNI:CT0027.
       0.603
DET0248
Cysteine desulfurase; Identified by similarity to SP:O54055.
       0.587
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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