STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0248Cysteine desulfurase; Identified by similarity to SP:O54055. (383 aa)    
Predicted Functional Partners:
DET0951
nifU domain protein; Identified by similarity to SP:P05340; match to protein family HMM PF01592.
 
 0.999
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 
 0.889
rpsP
Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.
  
 
  0.780
rpsI
Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.
   
 
  0.775
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 
  0.761
DET0825
2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.
      0.758
DET0247
Conserved hypothetical protein; Identified by similarity to OMNI:CT0027.
       0.752
DET1632
Identified by match to protein family HMM PF01106.
  
 
 0.750
DET0249
Conserved hypothetical protein; Identified by similarity to OMNI:MJ1613.
       0.741
DET0250
Iron ABC transporter, periplasmic iron-binding protein, putative; Identified by similarity to OMNI:NTL01TT0342.
       0.741
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.