STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0310Transcriptional regulator, putative; Identified by similarity to GP:7710206. (572 aa)    
Predicted Functional Partners:
fusA-1
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
 0.851
fusA-2
Translation elongation factor G; Identified by match to protein family HMM TIGR00231; match to protein family HMM TIGR00484.
    
 0.851
DET0311
Reductive dehalogenase, putative; Identified by similarity to GP:8163916; match to protein family HMM TIGR01409.
 
     0.685
DET0088
Reductive dehalogenase domain protein; Identified by similarity to GP:8163916.
  
   0.614
DET0309
Hypothetical protein; Identified by Glimmer2; putative.
       0.570
DET0235
Reductive dehalogenase, putative; Identified by similarity to GP:8163916; match to protein family HMM TIGR01409.
  
   0.564
DET1535
Reductive dehalogenase, putative; Identified by similarity to GP:8163916; match to protein family HMM TIGR01409.
 
 
 0.547
DET0180
Reductive dehalogenase, putative; Identified by similarity to GP:3002555; similarity to GP:5531941; match to protein family HMM TIGR01409.
  
     0.528
DET0729
[Fe] hydrogenase, HymB subunit, putative; Identified by similarity to GP:14250934.
  
 
 0.467
DET0876
Reductive dehalogenase, putative; Identified by similarity to GP:8163916; match to protein family HMM TIGR01409.
  
     0.436
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.