STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0325Identified by match to protein family HMM PF01734. (275 aa)    
Predicted Functional Partners:
DET0326
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE2094; match to protein family HMM PF01935.
       0.629
DET0024
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
     
 0.614
DET0327
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00170.
       0.603
DET0323
Site-specific recombinase, phage integrase family.
       0.458
DET0328
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS3859.
       0.455
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.436
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.422
DET1502
Major facilitator family protein; Identified by similarity to OMNI:NTL01MM3272.
 
      0.413
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.